Description

Display Conventions and Configuration

The signal for each sample is split into two tracks. In green are the chromosomal FIRST strand reads and in blue are the chromosomal SECOND strand reads. This way, separate anti-sense transcripts can be seen for each tissue.

Methods

RNA-seq were mapped to the hg38 genomes and GENCODE 25 annotation set using STAR.

Credits

We are very grateful to all women who consented to take part in our research programme and for the assistance of research nurses and clinical colleagues at Central Manchester University Hospitals NHS Foundation Trust. We thank Ian Donaldson, Peter Briggs and Andy Hayes of the Bioinformatics and Genomic Technologies Core Facilities at the University of Manchester for assistance with RNA-sequencing. REJ is a UK Medical Research Council (MRC) clinical research training fellow. NAH is a Wellcome Trust senior fellow in clinical science (WT088566MA). This project received support from the Wellcome Trust (WT097820) with additional support from MRC project grants MR/L009986/1 to NB and NAH, the British Council (14BX15NHBG) to NAH and MR/J003352/1 to KPH.

References

Part of this data is unpublished. Please do not share without prior permission of neil.hanley@manchester.ac.uk This track includes published data from: Gerrard, D. T., Berry, A. A., Jennings, R. E., Hanley, K. P., Bobola, N., Hanley, N. A., Aug. 2016. An integrative transcriptomic atlas of organogenesis in human embryos. eLife 5, e15657+. URL